Regulation of TORC2 function and localization by Rab5 GTPases in Saccharomyces cerevisiae

The evolutionarily conserved Target of Rapamycin (TOR) complex-2 (TORC2) is an essential regulator of plasma membrane homeostasis in budding yeast (Saccharomyces cerevisiae). In this yeast, TORC2 phosphorylates and activates the effector protein kinase Ypk1 and its paralog Ypk2. These protein kinases, in turn, carry out all the crucial functions of TORC2 by phosphorylating and thereby controlling the activity of at least a dozen downstream substrates. A previously uncharacterized interplay between the Rab5 GTPases and TORC2 signaling was uncovered through analysis of a newly suspected Ypk1 target. Muk1, one of two guanine nucleotide exchange factors for the Rab5 GTPases, was found to be a physiologically relevant Ypk1 substrate; and, genetic analysis indicates that Ypk1-mediated phosphorylation activates the guanine nucleotide exchange activity of Muk1. Second, it was demonstrated both in vivo and in vitro that the GTP-bound state of the Rab5 GTPase Vps21/Ypt51 physically associates with TORC2 and acts as a direct positive effector required for full TORC2 activity. These interrelationships provide a self-reinforcing control circuit for sustained up-regulation of TORC2-Ypk1 signaling. In this overview, we summarize the experimental basis of these findings, their implications, and speculate as to the molecular basis for Rab5-mediated TORC2 activation.     

SAR optimization studies on a novel series of 2-anilinopyrimidines as selective inhibitors against triple-negative breast cancer cell line MDA-MB-468

Triple-negative breast cancers (TNBCs) account for approximately 15% of breast cancer cases and exhibit an aggressive clinical behavior. In this study, we designed and synthesized two series of 2-anilinopyrimidines based on the structure of our previously reported compound 1 that act as a selective inhibitor of the basal-like TNBC cell line MDA-MB-468. Through the fine-tuning of 1, cyclic and acyclic amines at 4-position of the pyrimidine core were turned out to be crucial for the selectivity. An extensive analysis of structure-activity relationships of the analogs revealed that aminoalkyl groups at the end of the propyl chain are amenable to modification. Among the newly synthesized analogs, compound 38, bearing 4-chloropiperidinyl and cyclohexyl groups, was found to be the most potent and selective, and was about three times more potent and selective than 1 was against the TNBC cells.     

2008-2014年新疆艾比湖流域土壤水分时空分布特征

传统的土壤水分模拟研究难以从土壤水分变化的时空双向出发表达其连续演变的过程,存在时空尺度效应问题。借助SWAT模型模拟的长时间序列优势,结合高分辨率卫星影像和遥感技术,力图在时空尺度效应问题上取得突破。并利用长时间序列的模拟结果分析流域土壤水分的空间格局和不同维度时空异质性。结果表明：（1）2008-2014年间艾比湖流域土壤水分主要受气温、降水及人类活动影响,呈波动变化,总体偏低且具有逐年减小趋势。（2）受降水、地形及土地覆被影响,土壤水分分布呈现出由山区向两侧平原减少的特点,且林地 > 农用地 > 草地 > 稀疏植被。（3）近10年间土壤水分低值区由原来的北部山区及平原向东部、东南部平原区及南部山区迁移,东部减少最为明显。（4）流域四季土壤水分变化差异显著。其中,春季主要受融雪影响;夏季、秋季主要受降雨量和气温影响;冬季主要受固态降雪和气温影响;且不同年份、相同季节、相同子流域土壤水分变化趋势表现一致。     

2000-2015年中国PM2.5浓度时空分布特征及其城乡差异

近40年来,中国快速经济发展引发较为严重的大气污染,PM_2.5是一种重要的空气污染物,掌握其时空分布规律是对其进行防治的重要前提。基于遥感反演出的PM_2.5浓度数据集,研究了中国2000-2015年PM_2.5浓度的时空分布特征,并基于界定的1376个城镇城区及对应乡村的边界分析了每年PM_2.5浓度值的城乡差异,用线性趋势分析法计算城镇PM_2.5浓度的年际变化速率及显著性。结果表明,研究期内,PM_2.5浓度高于35 μg/m³的面积比例由18.58%增加至32.03%,低于15 μg/m³的面积从43.92%减少到25.12%。PM_2.5污染最严重的地区分布在塔里木盆地、河北南部、河南北部和山东西部。从2000年到2015年,中国绝大多数城镇PM_2.5浓度显著增加,尤其是在东北平原、太行山以东的河北省西南部、燕山以南的北京天津及河北唐山、鲁中南山地丘陵及周围平原地区、华北平原江苏省北部。PM_2.5城乡差异在河北省、山西省两条东北-西南向S形条带区域、浙江省-福建省条带及天山北部绿洲区域较大。研究对PM_2.5高浓度区域、PM_2.5浓度增长较快区域以及城区PM_2.5浓度对乡村影响较大区域进行图示,为中国进一步控制雾霾污染提供一定科学依据。     

火龙果转录组测序、基因表达与功能分析

利用高通量测序技术对火龙果(Hylocereus undulatus Britt)红肉品种‘大红二号’的花芽、果实和枝条不同发育阶段的基因表达进行研究。结果显示,转录组测序共获得468.68 Gb原始数据(Raw data),从头组装获得239 152条转录本和162 519条unigene,约53.74%的unigene得到注释。分别在43 506条和16 251条unigene中检测到600 283个SNP位点和56 147个SSR位点。基因表达分析结果表明,在火龙果不同组织Fl510、Fl513、Fl514、Fl518、F711、F715、S513、S419中分别有31、7、5、152、17、63、17、8个特异表达的unigene。通过GO和KEGG富集分析,发现了一些组织特异的GO条目和代谢通路,如在Fl510中富集的类萜骨架生物合成代谢通路等。本研究还对参与花发育的候选基因进行了鉴定和表达分析,他们包括COL基因、FT-like基因、分生组织决定基因和器官决定基因等。     

脂肪来源干细胞治疗心肌梗死的现状及策略

急性心肌梗死是最常见的心血管疾病之一,由于冠状动脉供血不全导致心肌细胞大量坏死、生存微环境恶化,近期可发生心肌细胞机械-电生理功能紊乱,远期可导致心力衰竭。目前的临床治疗方法虽能在一定程度上改善心功能,减轻心室重塑,但由于心肌细胞再生能力有限,心脏功能难以完全恢复正常。近年来,脂肪来源干细胞移植治疗急性心肌梗死受到广泛关注,但由于移植后细胞的存留和存活率普遍较低,总体治疗效果并不理想。本文对目前脂肪来源干细胞治疗急性心肌梗死的现况及提高其疗效的途径和方法作一综述。     

Status,trends, and equilibrium abundance estimates of the translocated sea otter population in Washington State

Sea otters (Enhydra lutris kenyoni) historically occurred in Washington State, USA, until their local extinction in the early 1900s as a result of the maritime fur trade. Following their extirpation, 59 sea otters were translocated from Amchitka Island, Alaska, USA, to the coast of Washington, with 29 released at Point Grenville in 1969 and 30 released at La Push in 1970. The Washington Department of Fish and Wildlife has outlined 2 main objectives for sea otter recovery: a target population level and a target geographic distribution. Recovery criteria are based on estimates of population abundance, equilibrium abundance (K), and geographic distribution; therefore, estimates of these parameters have important management implications. We compiled available survey data for sea otters in Washington State since their translocation (1977–2019) and fit a Bayesian state-space model to estimate past and current abundance, and equilibrium abundance at multiple spatial scales. We then used forward projections of population dynamics to explore potential scenarios of range recolonization and as the basis of a sensitivity analysis to evaluate the relative influence of movement behavior, frontal wave speed, intrinsic growth, and equilibrium density on future population recovery potential. Our model improves upon previous analyses of sea otter population dynamics in Washington by partitioning and quantifying sources of estimation error to estimate population dynamics, by providing robust estimates of K, and by simulating long-term population growth and range expansion under a range of realistic parameter values. Our model resulted in predictions of population abundance that closely matched observed counts. At the range-wide scale, the population size in our model increased from an average of 21 independent sea otters (95% CI = 13–29) in 1977 to 2,336 independent sea otters (95% CI = 1,467–3,359) in 2019. The average estimated annual growth rate was 12.42% and varied at a sub-regional scale from 6.42–14.92%. The overall estimated mean K density of sea otters in Washington was 1.71 ± 0.90 (SD) independent sea otters/km² of habitat (1.96 ± 1.04 sea otters/km², including pups), and estimated densities within the current range correspond on average to 87% of mean sub-regional equilibrium values (range = 66–111%). The projected value of K for all of Washington was 5,287 independent sea otters (95% CI = 2,488–8,086) and 6,080 sea otters including pups (95% CI = 2,861–9,300), assuming a similar range of equilibrium densities in currently un-occupied habitats. Sensitivity analysis of simulations of sea otter population growth and range expansion suggested that mean K density estimates in currently occupied sub-regions had the largest impact on predicted future population growth (r² = 0.52), followed by the rate of southward range expansion (r² = 0.26) and the mean K density estimate of currently unoccupied sub-regions to the south of the current range (r² = 0.04). Our estimates of abundance and sensitivity analysis of simulations of future population abundance and geographic range help determine population status in relation to population recovery targets and identify the most influential parameters affecting future population growth and range expansion for sea otters in Washington State.     

Sources of Nitrogen in Combination with Systems of Irrigation Influence the Productivity of Modern Rice (<i>Oryza sativa</i> L.) Cultivars during Dry Season in Sub-Tropical Environment

In irrigated agricultural systems, nitrogen (N) and water are the vital resources for sustainability of the crop production in the modern era of climate change. The current study aimed to assess the impact of water and N management on the productivity of irrigated rice cultivars. In the context, a field observation was done at the research farm of Bangladesh Agricultural University, Mymensingh, during dry seasons in consecutive two years (2018–2019 and 2019–2020). The experiments were set up following split-plot design assigning water management in the main plots, nitrogen management in the sub-plots, and the cultivars were approved in the split-split plot with three replications. After two years observation, it was revealed that rice cultivar Binadhan-8 gave the maximum value of leaf area index, number effective tillers hill^-1 and grains panicle^-1 which lead to the higher grain yield (GY). Substantial relationships were observed among the concentration of N, growth, total dry matter (TDM) and N content, N uptake, N utilization effectiveness, and GY. However, with little exception, the Combined effect of water and N, cultivars and water management were varied significantly for all parameters. Finally, the results of the current study concluded that application of irrigation at 8 days after the disappearance of ponded water and source of 105 kg N ha^-1 from PU + Poultry manure are the best management approach for the excellent performance of rice cultivar Binadhan-8.